I'm at my computer now...a little more detail. See the screenshot below. That is one example where notes are cutting out. Note that none of them are repeats actually. But at least 30% of the notes trigger no sound. It must have to do with Legato phrasing, means that there is no space to allow the repetition threshold to pass...so its stuck on the 2nd and 3rd repeat sounds...which aren't sounding. I guess?
Does Jay's sequence use the cell in question for repetition?
See example midi below. No repeated notes really. But they are legato overlapped...