I am looking into this together with a Steinberg developer right now, and hopefully we can find a solution.
Until then, I can offer a workaround to disable ASIO Guard for VEPro manually. You can do this by going to:
[Menu] > Devices > Plug-in Manager > VST Instruments > Vienna Ensemble Pro > Click "i" for Plug-in information > Click to set ASIO Guard to Inactive.
Please perform this operation on ALL VEPro Instrument and Fx plugins. Then also Audio Input plugins will work properly.
I have tried your suggestion and it does improve the dropped out audio when switching tracks but the processor drop was so minimal because most of my template involves intances of VE PRO 5. The bigger issue for me is that even with your suggestion with ASIO Guard 2 on with VE PRO 5 I can not export audio with out a serious error and a crash from Cubase.