Of course Paul! (sorry it's now Sunday morning but I hope it's helpful nevertheless ;-))
I meant that, for every instrument I have in my template, I have to manually create a mapping command (CC121 in my case) which enables/disables the instrument. I currently (unless I've missed something and if I have please tell me!) have to create an individual routing command manually for every single instrument I have in my template. There are no shortcuts or ways to achieve this any faster - it's all got to be done individually.
Hence my original question really - I organise all my libraries into folders (VSL Synchron Woods for example) and while there are still a lot of folders it's more like 50-100, rather than the 1000+ individual insturments I have.
Because I'm rarely using every instrument I own in a given cue (who is?) being able to activate and deactivate instruments is a fantastic feature, (even when purged kontakt instruments use a lot of RAM for example) but currently the amount of time it will take to set it up is prohibitive.
I hope that was helpful, more than happy to provide any further info!
Mike