If person A turns on Natural Volume and loads Presets:
/A - Strings PRESET - Files/01 Violin solo/VI VSL Preset Level 1 and
/B - Woodwind PRESET - Files/32 Flute I/FL1 VSL Preset Level 1,
VI Pro will set Vol to 127 for the violin and 118 for the flute.
If person B turns on Natural Volume and loads Patches:
/A - String patches/01 Violin solo/10 PERF INTERVAL/01 VI_perf-legato and
/B - Woodwind patches/32 Flute I/10 PERF INTERVAL/01 FL1_perf-legato,
VI Pro will set Vol to 127 for the violin and 127 for the flute.
Did VSL design Natural Volume to work correctly for person A or for person B? No hint from VSL. VSL should rename "Natural Volume" to "Unnatural, Random Volume".
I'm not sure what you are referring to here, because when VI Pro loads a PATCH (or MATRIX), it doesn't set any volumes within VI Pro. MIR Pro will change if it sees a new instrument, but MIR Pro sets Violin Solo to -21 and Flute solo to -18.5, that doesn't change if it's a Preset or Patch.
Natural Volume is a function of MIR Pro, and has nothing to do with settings in VI Pro, other than the instrument it detects.
The Flute PRESET, does set the VI Pro volume to 118, but loading a Flute Patch does not change or set any volume.
It looks like maybe you are just confusing yourself here.